In my init.el, I have the following line
(setq custom-file (expand-file-name "custom.el" user-emacs-directory))
which is supposed to set the file custom.el into .emacs.d config folder for getting all customization tidy. Over the years, emacs populated this file with various things.
I ran customization with M-x customize-variable and made some change and saved them. Afterwards, I discovered that emacs added the new custom into custom.el, overwriting the previous version of the file.
What's the mistake? Should I put (load custom-file) after the line above? Can this be the problem?