I have a large folder encrypted with eCryptfs and synced with Dropbox. Is somehow possibile to migrate it to EncFS without re-encrypting it and thus without re-upload it to Dropbox?
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No. Encfs and Ecryptfs use different format. The only way to convert between them is to decrypt one and encrypt for the other.

Gilles 'SO- stop being evil'
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+1. If keeping the data encrypted is important, I wouldn't actually "decrypt" anything to disk, just mount & copy into the new format – Xen2050 Apr 09 '17 at 00:12